Representation of functional information in the SWISS-PROT Data Bank
نویسندگان
چکیده
Functional information in SWISS-PROT results, primarily, from assessment of articles reporting characterization. Predicted information is labeled with flags describing the evidence level (e.g. potential, probable, by similarity).
منابع مشابه
The SWISS-PROT protein sequence data bank, recent developments
SWISS-PROT [1] is an annotated protein sequence database established in 1986 and maintained collaboratively, since 1988, by the Department of Medical Biochemistry of the University of Geneva and the EMBL Data Library [2]. The SWISS-PROT protein sequence data bank consist of sequence entries. Sequence entries are composed of different lines types, each with their own format. For standardization ...
متن کاملCluSTr: a database of clusters of SWISS-PROT+TrEMBL proteins
The CluSTr (Clusters of SWISS-PROT and TrEMBL proteins) database offers an automatic classification of SWISS-PROT and TrEMBL proteins into groups of related proteins. The clustering is based on analysis of all pairwise comparisons between protein sequences. Analysis has been carried out for different levels of protein similarity, yielding a hierarchical organisation of clusters. The database pr...
متن کاملThe SWISS-PROT protein sequence data bank.
SWISS-PROT is an annotated protein sequence database established in 1986 and maintained collaboratively, since 1988, by the Department of Medical Biochemistry of the University of Geneva and the EMBL Data Library BAIROCH, Amos Marc, BOECKMANN, Brigitte. The SWISS-PROT protein sequence data bank. Nucleic Acids Research, 1991, vol. 19 Suppl, p. 2247-9 DOI : 10.1093/nar/19.suppl.2247
متن کاملExploring Bias in the Protein Data Bank Using Contrast Classifiers
In this study we analyzed the bias existing in the Protein Data Bank (PDB) using the novel contrast classifier approach. We trained an ensemble of neural network classifiers, called a contrast classifier, to learn the distributional differences between non-redundant sequence subsets of PDB and SWISS-PROT. Assuming that SWISS-PROT is a representative of the sequence diversity in nature while the...
متن کاملThe IMB Jena Image Library of Biological Macromolecules: 2002 update
The IMB Jena Image Library of Biological Macromolecules (http://www.imb-jena.de/IMAGE.html) is aimed at a better dissemination of information on three-dimensional biopolymer structures with an emphasis on visualization and analysis. It provides access to all structure entries deposited at the Protein Data Bank (PDB) and Nucleic Acid Database (NDB). In addition, basic information on the architec...
متن کاملذخیره در منابع من
با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید
برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید
ثبت ناماگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید
ورودعنوان ژورنال:
- Bioinformatics
دوره 15 12 شماره
صفحات -
تاریخ انتشار 1999